I have tried using runAssembly on the sff files I received from the sequencing guys, but for one file I get an error message:
$ runAssembly -o newbler_191009 -ace -m -large ./WRM.sff
newbler_191009 is now ready for assembly
Error: Read file/run not found: ./WRM.sff
Error in runAssembly: Unable to launch addRun, or error running addRun.
It accepts the other files. The problematic sff file is much larger than the others (2.3Gb). Is there a file size limit with this version of the Newbler software (v 1.1.03.23) ?
I could run it with the fasta/qual file, but sff would be nicer.
$ runAssembly -o newbler_191009 -ace -m -large ./WRM.sff
newbler_191009 is now ready for assembly
Error: Read file/run not found: ./WRM.sff
Error in runAssembly: Unable to launch addRun, or error running addRun.
It accepts the other files. The problematic sff file is much larger than the others (2.3Gb). Is there a file size limit with this version of the Newbler software (v 1.1.03.23) ?
I could run it with the fasta/qual file, but sff would be nicer.
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