Unconfigured Ad

Collapse
X
 
  • Time
  • Show
Clear All
new posts
  • sunredrock
    Junior Member
    • Jan 2013
    • 3

    #1

    Something wrong with access Bam file using "SeqAn" library

    Hi,
    I'm a user for SeqAn Library. I download this version[Release 1.3.1] from website http://www.seqan.de/downloads/?did=31.
    I used "BamStream" to access BAM file. But when I compiled code, system report error,like this:
    "ERROR: Trying to open BAM file and ZLIB is not available!"

    But, I have installed ZLIB(version zlib-1.2.7)、BZIP and added corresponding library to environment path file( ~/.bashrc).
    My compile environment is:
    Linux version 2.6.18-194.el5
    gcc version 4.1.2 20080704 (Red Hat 4.1.2-48)


    Anyone can solve this problem ?
    Thank you !
  • hrbeuli
    Junior Member
    • Apr 2013
    • 1

    #2
    Hi,
    please read this:


    and input gcc command like this:
    g++ -lrt -g -L/usr/local/lib -lz -lbz2 -DSEQAN_HAS_ZLIB=1 -DSEQAN_HAS_BZIP2=1 -I/home/lm/seqan-trunk/core/include -I/home/lm/seqan-trunk/extras/include -I/usr/local/include main.cpp

    good luck

    Comment

    • sunredrock
      Junior Member
      • Jan 2013
      • 3

      #3
      thank you very much!

      Comment

      Latest Articles

      Collapse

      • kinpict.com
        Reply to 16S/ITS Profiling vs. Shotgun Metagenomics: What Changes in Your Workflow?
        by kinpict.com
        The part about this topic feels surprisingly grounded, and the details on the page is the bit that made me slow down. I’d keep <a href="https://kinpict.com/">ai family photo generator</a> bookmarked for later.
        Today, 06:37 PM
      • SEQadmin2
        16S/ITS Profiling vs. Shotgun Metagenomics: What Changes in Your Workflow?
        by SEQadmin2





        NGS has revolutionized clinical microbiology by offering new ways to identify and surveil pathogens without prior knowledge of the target. One popular approach is 16S rRNA and ITS amplicon sequencing, which targets specific microbial markers. But studies are increasingly incorporating shotgun metagenomics, a technique that sequences all DNA from a sample without targeting specific microbial markers. This approach allows more detailed taxonomic classification,...
        10-30-2026, 06:46 AM

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by SEQadmin2, 11-12-2026, 07:59 AM
      0 responses
      27 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 11-05-2026, 09:25 AM
      0 responses
      35 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 11-03-2026, 11:54 AM
      2 responses
      56 views
      0 reactions
      Last Post kinpict.com  
      Started by SEQadmin2, 10-28-2026, 09:57 AM
      0 responses
      175 views
      0 reactions
      Last Post SEQadmin2  
      Working...