Unconfigured Ad

Collapse
X
 
  • Time
  • Show
Clear All
new posts
  • sunredrock
    Junior Member
    • Jan 2013
    • 3

    #1

    Something wrong with access Bam file using "SeqAn" library

    Hi,
    I'm a user for SeqAn Library. I download this version[Release 1.3.1] from website http://www.seqan.de/downloads/?did=31.
    I used "BamStream" to access BAM file. But when I compiled code, system report error,like this:
    "ERROR: Trying to open BAM file and ZLIB is not available!"

    But, I have installed ZLIB(version zlib-1.2.7)、BZIP and added corresponding library to environment path file( ~/.bashrc).
    My compile environment is:
    Linux version 2.6.18-194.el5
    gcc version 4.1.2 20080704 (Red Hat 4.1.2-48)


    Anyone can solve this problem ?
    Thank you !
  • hrbeuli
    Junior Member
    • Apr 2013
    • 1

    #2
    Hi,
    please read this:


    and input gcc command like this:
    g++ -lrt -g -L/usr/local/lib -lz -lbz2 -DSEQAN_HAS_ZLIB=1 -DSEQAN_HAS_BZIP2=1 -I/home/lm/seqan-trunk/core/include -I/home/lm/seqan-trunk/extras/include -I/usr/local/include main.cpp

    good luck

    Comment

    • sunredrock
      Junior Member
      • Jan 2013
      • 3

      #3
      thank you very much!

      Comment

      Latest Articles

      Collapse

      • SEQadmin2
        Multiomic Liquid Biopsy: What DNA/RNA Panels Reveal That DNA Alone Can’t
        by SEQadmin2



        Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?

        Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating
        ...
        10-14-2026, 09:55 AM
      • SEQadmin2
        New Genomics Technologies Take Aim at Long-Standing Limits
        by SEQadmin2


        Researchers using sequencing and genomics tools often have to make trade-offs. They can choose between speed or scale, short reads or long-range information, or targeted panels or a view of the whole transcriptome. New technologies that have been released this year are built to address those tough choices.

        We asked six companies the same four questions to learn about their latest products. The new technologies bring a lot to the table, including rethinking sequencing
        ...
        09-28-2026, 10:25 AM

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by SEQadmin2, Yesterday, 11:13 AM
      0 responses
      19 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, Yesterday, 10:48 AM
      0 responses
      18 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 10-15-2026, 10:52 AM
      0 responses
      36 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 10-14-2026, 05:39 AM
      0 responses
      42 views
      0 reactions
      Last Post SEQadmin2  
      Working...