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  • shadow19c
    Member
    • Oct 2012
    • 27

    #1

    Blast Bisulfite seq or split read mapper

    Hello,
    I want to catch new TEs insertion.
    So I sarted with unammped reads, and I tried to force the mapping only in the TEs genome.
    But as you know the reads are not converted and are not mappable with a blast


    So I want to know if you know a good blast bisulfite which can do like bismark or bsseeker the conversion, or split read mapper (I tried SEGEMEHL but not efficient)?

    Thanks a lot

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