Using pbShort

[Farhat]

Hi,

Did anyone have success using pbShort? I have tried several real and sample datasets and it runs without error but always get an empty tam file.

-Farhat

[monsanto]

Use pbShort

Hi,

I use the pbShort successfully ...
What is the sequence of commands and their input parameters that you use at work?

Monsanto

[ehscholl]

pbShort keeps crashing on me

I've been trying for about a week to compare a set of about 250k 454 reads to a reasonably small genome (54MB) and the pbShort program keeps crashing on me with an error message of:

terminate called after throwing an instance of 'std:ut_of_range'
what(): basic_string::substr


I've sent an email in to Murth Labs about this but gotten no response. (To be fair, it's been about 24 hours since I sent the message...)

Has anyone else seen this error before?

TIA

[ehscholl]

That last post should have been std :: out of range. I didn't realize it would automatically emoticon me