If nseg is in your $PATH it should be ok. What happens if you just run
Do you get the help for trf printed to screen?
Code:
$ trf
-
-
Hello ,I was able to run this with all commands ,i did not compiled nseg properly...but I could run it then..
NOw, I have data from RepeatMAsker , the repeat library ,but it does not show any transpsosns in my genome...I ran it with RMBlast , do you think running with HMMER ,CROSS_MATCH would make a diff ?
also , any recommendations for transposon analysis ?Comment
-
help
Dear yzzhang
Have you resovled this problem? I came accross the same problem!
Originally posted by yzzhang View PostComment
-
If you exported the RepeatScout-1 directory to your $PATH, you don't need to write ./filename.prl, you just need to write filename.prl. If you include "./", it will search it in the current directory and maybe that is the problem (just guessing, I'm not a RepeatScout user, this looks more like a shell problem!)
Comment
-
NGS has revolutionized clinical microbiology by offering new ways to identify and surveil pathogens without prior knowledge of the target. One popular approach is 16S rRNA and ITS amplicon sequencing, which targets specific microbial markers. But studies are increasingly incorporating shotgun metagenomics, a technique that sequences all DNA from a sample without targeting specific microbial markers. This approach allows more detailed taxonomic classification, detection...Yesterday, 06:46 AM -
Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?
Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating...10-14-2026, 09:55 AM
Comment