dN/dS calculation on mpileup data

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fanx

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Join Date: Sep 2012

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dN/dS calculation on mpileup data

04-05-2013, 11:30 AM

Hello, everyone. I am doing a viral re-sequencing project, mapped reads in mpileup format. Is anyone aware of any programs that can do dN/dS calculation with this data format, under a defined wondow size and coverage depth? dN/dS=nonsynonymous substitution per site to synonymous substitution per site.

Many thanks!
Tags: dn/ds, mpileup

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