CHIP Seq data analysis tutorial?

[dicty]

Is there any step by step tutorial for CHIP Seq data analysis? What are the major steps and correspondent popular software packages?

Thanks,
Dicty

[GenoMax]

This tutorial refers to Galaxy but you can install the programs locally if you prefer to do so (and not use galaxy at all): http://jura.wi.mit.edu/bio/education...seq_toPost.pdf

Here is a reference for a review of the peak callers for ChIP-seq: http://www.plosone.org/article/info:...l.pone.0011471

[dicty]

The information is very helpful. Thank you very much!

Dicty

This tutorial refers to Galaxy but you can install the programs locally if you prefer to do so (and not use galaxy at all): http://jura.wi.mit.edu/bio/education...seq_toPost.pdf

Here is a reference for a review of the peak callers for ChIP-seq: http://www.plosone.org/article/info:...l.pone.0011471

[pmad]

we have recently published this guidelines:
Bailey T, Krajewski P, Ladunga I, Lefebvre C, Li Q, et al. (2013) Practical Guidelines for the Comprehensive Analysis of ChIP-seq Data. PLoS Comput Biol 9(11): e1003326. doi:10.1371/journal.pcbi.1003326

http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1003326