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Is there any step by step tutorial for CHIP Seq data analysis? What are the major steps and correspondent popular software packages?
Thanks,
Dicty
Thanks,
Dicty
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This tutorial refers to Galaxy but you can install the programs locally if you prefer to do so (and not use galaxy at all): http://jura.wi.mit.edu/bio/education...seq_toPost.pdf
Here is a reference for a review of the peak callers for ChIP-seq: http://www.plosone.org/article/info:...l.pone.0011471 -
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we have recently published this guidelines:
Bailey T, Krajewski P, Ladunga I, Lefebvre C, Li Q, et al. (2013) Practical Guidelines for the Comprehensive Analysis of ChIP-seq Data. PLoS Comput Biol 9(11): e1003326. doi:10.1371/journal.pcbi.1003326
http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1003326Pedro MadrigalComment
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