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I'm a new guy to bioinformatics.
i used tophat and cufflinks for my RNA-seq data to generate diff_out file.Until this step everything is fine.
then i started cummeRbund with my diff_out file, but always failed.
here is my command:
$ R
> library(cummeRbund)
> cuff_data <- readCufflinks('diff_out')
here is the problem:
Creating database diff_out/cuffData.db
Reading diff_out/genes.fpkm_tracking
Checking samples table...
Populating samples table...
Writing genes table
Reshaping geneData table
Recasting
Writing geneData table
Error in sqliteExecStatement(con, statement, bind.data) :
RS-DBI driver: (unable to bind data for parameter ':status')
Highly appreciate your help.
i used tophat and cufflinks for my RNA-seq data to generate diff_out file.Until this step everything is fine.
then i started cummeRbund with my diff_out file, but always failed.
here is my command:
$ R
> library(cummeRbund)
> cuff_data <- readCufflinks('diff_out')
here is the problem:
Creating database diff_out/cuffData.db
Reading diff_out/genes.fpkm_tracking
Checking samples table...
Populating samples table...
Writing genes table
Reshaping geneData table
Recasting
Writing geneData table
Error in sqliteExecStatement(con, statement, bind.data) :
RS-DBI driver: (unable to bind data for parameter ':status')
Highly appreciate your help.
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