cummeRbund help!

yjin005

Junior Member

Join Date: Apr 2013

Posts: 1
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#1

cummeRbund help!

04-29-2013, 08:38 PM

I'm a new guy to bioinformatics.
i used tophat and cufflinks for my RNA-seq data to generate diff_out file.Until this step everything is fine.
then i started cummeRbund with my diff_out file, but always failed.

here is my command:
$ R
> library(cummeRbund)
> cuff_data <- readCufflinks('diff_out')
here is the problem:

Creating database diff_out/cuffData.db
Reading diff_out/genes.fpkm_tracking
Checking samples table...
Populating samples table...
Writing genes table
Reshaping geneData table
Recasting
Writing geneData table
Error in sqliteExecStatement(con, statement, bind.data) :
RS-DBI driver: (unable to bind data for parameter ':status')

Highly appreciate your help.
Tags: cummerbund
mknut

Member

Join Date: Jul 2012

Posts: 23
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#2

04-30-2013, 01:18 AM

The creator of cummeRbund (lgoff) has commented on identical problem here.
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