Dear All
I am using the version 1.2.0 of Crossbow. I have managed to get it working for a file specified in .manifest input file that points to an FTP server.
I am wondering how would you get it to work for a input data that is locally already on your computer, such as .fastq or .fastq.gz file or .sra file ? This will avoid internet dependency.
Also, I tried the bowtie option by specifying the path to bowtie2 and crossbow did not work. Does Crossbow work only for bowtie1 and no other aligner ?
Narain
I am using the version 1.2.0 of Crossbow. I have managed to get it working for a file specified in .manifest input file that points to an FTP server.
I am wondering how would you get it to work for a input data that is locally already on your computer, such as .fastq or .fastq.gz file or .sra file ? This will avoid internet dependency.
Also, I tried the bowtie option by specifying the path to bowtie2 and crossbow did not work. Does Crossbow work only for bowtie1 and no other aligner ?
Narain
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