Database with binding sites

[anioannides]

Hello, i am looking for a database on a project i am working on. I need to find a database in which you search for a gene (by name or ID, or by giving the sequence as a query) and shows results about different binding sites on the gene (for promoters, transcription factors etc.). Something like Genbank, but the results should provide information about binding sites on the sequence. I found Matinspector, but i need a database as well. I've checked this thread:

http://seqanswers.com/forums/showthread.php?t=27484

but i haven't found exactly what i'm looking for. Does anyone have any ideas?

Thank you in advance!

[lab411]

Hi,
I am not sure but this might be helpful to you:

http://elm.eu.org/

Eukaryotic linear motif database.

Let me know if you have found something better.

cheers.

[anioannides]

hello,
thank you for your reply. I'm working with genes and elm is for proteins. I've looked again in the link i posted above and i think swissregulon is what i need. (or an older free version of transfaq)

[lab411]

Ooops, my mistake. I did not read well the message. This swissregulon site seems good enough for TFBS in any case!