Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • SRA decryption help

    Dear all,

    I have a couple of *.sra.ncbi_enc files and I am trying to decrypt them; however, NCBI website is very confusing:

    1. Here they say that:

    The password is not given on the command line. It must be in a a file that should be able to be read only by the user account running the program.

    The location of that file should be found in one of these places in order:

    1. An environment variable VDB_PWFILE

    2. The VDB Configuration file option 'krypto/pwfile'
    2. Here they say:

    Decryption password and dbGaP repository key.

    Recently implemented “dbGaP repository key” is a dbGaP project wide security token required for running NCBI SRA toolkit and decryption tools. The key is provided in a file with suffix “.NGC”. Currently it needs to be downloaded from “My Research Projects” page of PI’s dbGaP account.

    3. Another Seqnaswers fellow told me to do this which did not work as well:

    1. make a new folder at your home directory: /home/xxx/.ncbi
    2. create a file named vdb-passwd and save your passwd in it
    3. run vdb-decrypt
    Any ideas?

    Thanks,
    GH

  • #2
    Watch this video: https://youtu.be/FjYO6Ys5cpc

    Comment


    • #3
      I get this error while decrypting by VDB-DECRYPT

      err: size "insufficient" while validating file size in file system module

      Comment


      • #4
        vdb-decrypt.2.9.0 err: size insufficient while validating file within file system module - cannot use filesize of zero when checking if cached file is complete

        Comment

        Latest Articles

        Collapse

        • seqadmin
          Advanced Tools Transforming the Field of Cytogenomics
          by seqadmin


          At the intersection of cytogenetics and genomics lies the exciting field of cytogenomics. It focuses on studying chromosomes at a molecular scale, involving techniques that analyze either the whole genome or particular DNA sequences to examine variations in structure and behavior at the chromosomal or subchromosomal level. By integrating cytogenetic techniques with genomic analysis, researchers can effectively investigate chromosomal abnormalities related to diseases, particularly...
          09-26-2023, 06:26 AM
        • seqadmin
          How RNA-Seq is Transforming Cancer Studies
          by seqadmin



          Cancer research has been transformed through numerous molecular techniques, with RNA sequencing (RNA-seq) playing a crucial role in understanding the complexity of the disease. Maša Ivin, Ph.D., Scientific Writer at Lexogen, and Yvonne Goepel Ph.D., Product Manager at Lexogen, remarked that “The high-throughput nature of RNA-seq allows for rapid profiling and deep exploration of the transcriptome.” They emphasized its indispensable role in cancer research, aiding in biomarker...
          09-07-2023, 11:15 PM

        ad_right_rmr

        Collapse

        News

        Collapse

        Topics Statistics Last Post
        Started by seqadmin, Yesterday, 09:36 AM
        0 responses
        8 views
        0 likes
        Last Post seqadmin  
        Started by seqadmin, 10-02-2023, 07:14 AM
        0 responses
        15 views
        0 likes
        Last Post seqadmin  
        Started by seqadmin, 09-29-2023, 09:38 AM
        0 responses
        16 views
        0 likes
        Last Post seqadmin  
        Started by seqadmin, 09-27-2023, 06:57 AM
        0 responses
        16 views
        0 likes
        Last Post seqadmin  
        Working...
        X