Dear All,
I am using GATK for first time. i installed galaxy locally and running the softwares in it.
I am using Unified Genotyper module. my Gatk version is (GenomeAnalysisTK-2.5-2-gf57256b)
I am getting error
##### ERROR ------------------------------------------------------------------------------------------
##### ERROR A USER ERROR has occurred (version 2.5-2-gf57256b):
##### ERROR The invalid arguments or inputs must be corrected before the GATK can proceed
##### ERROR Please do not post this error to the GATK forum
##### ERROR
##### ERROR See the documentation (rerun with -h) for this tool to view allowable command-line arguments.
##### ERROR Visit our website and forum for extensive documentation and answers to
##### ERROR commonly asked questions http://www.broadinstitute.org/gatk
##### ERROR
##### ERROR MESSAGE: The fasta file you specified (/tmp/tmp-gatk-NYjkbj) does not exist.
i mentioned the path to human genome fasta file in .loc file but again i am getting same error..
Could anyone suggest on this...
Thanks
Sridhar
I am using GATK for first time. i installed galaxy locally and running the softwares in it.
I am using Unified Genotyper module. my Gatk version is (GenomeAnalysisTK-2.5-2-gf57256b)
I am getting error
##### ERROR ------------------------------------------------------------------------------------------
##### ERROR A USER ERROR has occurred (version 2.5-2-gf57256b):
##### ERROR The invalid arguments or inputs must be corrected before the GATK can proceed
##### ERROR Please do not post this error to the GATK forum
##### ERROR
##### ERROR See the documentation (rerun with -h) for this tool to view allowable command-line arguments.
##### ERROR Visit our website and forum for extensive documentation and answers to
##### ERROR commonly asked questions http://www.broadinstitute.org/gatk
##### ERROR
##### ERROR MESSAGE: The fasta file you specified (/tmp/tmp-gatk-NYjkbj) does not exist.
i mentioned the path to human genome fasta file in .loc file but again i am getting same error..
Could anyone suggest on this...
Thanks
Sridhar
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