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  • leebo
    Junior Member
    • Jul 2013
    • 1
    #1

    Bowtie2 library path

    Hi,

    I am trying to run bowtie mapper on a cluster machine, but it seems like I'm having an old version of GLIB. When I submit my job to a cluster, I was getting :

    <bowtie path>/bowtie2-align: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.11' not found (required by <bowtie path>/bowtie2-align)

    The issue here is that my system administrator cannot upgrade this library file "libstdc++.so.6" (currently using libstdc++.so.6.0.10) to newer version (libstdc++.so.6.0.13) due to other dependancies.

    I tried copying over libstdc++.so.6.0.13 to my local directory and added it on LD_LIBRARY_PATH, but it seems like doesn't working so far. Is there anyone else who had same issues? Any help/suggestion will be greatly appreciated!

    Thanks,
    Bohyun
    Tags: bowtie2, library path
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