see below..
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Last edited by moritz1; 02-25-2016, 05:45 AM. -
You can install a local instance of galaxy that way you don't have to load it onto their server. -
I have tried Bpipe and it seems to work well. It takes some time to learn and get used to its way of doing things.
You can also write a shell script and I find it to be easier to understand..
But if your users will be doctors who might not have any unix experience. Anything that has a web interface will be much easier to use than unix environment..Comment
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I realize you are likely done with your thesis, so this information is for those who may stumble upon this thread. I would suggest to take a look at the latest development: NextflowWorkbench. Here's a preprint that discusses this new workflow system:
NextflowWorkbench: Reproducible and Reusable Workflows for Beginners and Experts
Jason P Kurs, Manuele Simi, Fabien Campagne
bioRxiv doi: http://dx.doi.org/10.1101/041236Comment
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