see below..
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Last edited by moritz1; 02-25-2016, 05:45 AM. -
You can install a local instance of galaxy that way you don't have to load it onto their server. -
I have tried Bpipe and it seems to work well. It takes some time to learn and get used to its way of doing things.
You can also write a shell script and I find it to be easier to understand..
But if your users will be doctors who might not have any unix experience. Anything that has a web interface will be much easier to use than unix environment..Comment
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I realize you are likely done with your thesis, so this information is for those who may stumble upon this thread. I would suggest to take a look at the latest development: NextflowWorkbench. Here's a preprint that discusses this new workflow system:
NextflowWorkbench: Reproducible and Reusable Workflows for Beginners and Experts
Jason P Kurs, Manuele Simi, Fabien Campagne
bioRxiv doi: http://dx.doi.org/10.1101/041236Comment
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Researchers using sequencing and genomics tools often have to make trade-offs. They can choose between speed or scale, short reads or long-range information, or targeted panels or a view of the whole transcriptome. New technologies that have been released this year are built to address those tough choices.
We asked six companies the same four questions to learn about their latest products. The new technologies bring a lot to the table, including rethinking sequencing...
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