Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • picard installation on ubuntu 12.0.4

    I can not the picard directorty and do not know if it installed or what to do next. Thanks.

    dnascopev@ubuntu:~$ sudo apt-get install picard
    Reading package lists... Done
    Building dependency tree
    Reading state information... Done
    The following extra packages will be installed:
    libavcodec53 libavformat53 libavutil51 libfftw3-3 libgsm1 libofa0
    libqt4-designer libqt4-help libqt4-scripttools libqt4-test
    libqtassistantclient4 libqtwebkit4 libschroedinger-1.0-0 libva1 libvpx1
    python-mutagen python-qt4 python-sip
    Suggested packages:
    libfftw3-dev python-qt4-dbg
    The following NEW packages will be installed:
    libavcodec53 libavformat53 libavutil51 libfftw3-3 libgsm1 libofa0
    libqt4-designer libqt4-help libqt4-scripttools libqt4-test
    libqtassistantclient4 libqtwebkit4 libschroedinger-1.0-0 libva1 libvpx1
    picard python-mutagen python-qt4 python-sip
    0 upgraded, 19 newly installed, 0 to remove and 0 not upgraded.
    Need to get 20.3 MB of archives.
    After this operation, 73.0 MB of additional disk space will be used.
    Do you want to continue [Y/n]? y
    Get:1 http://archive.ubuntu.com/ubuntu/ precise/main libgsm1 amd64 1.0.13-3 [29.3 kB]
    Get:2 http://security.ubuntu.com/ubuntu/ precise-security/main libavutil51 amd64 4:0.8.6-0ubuntu0.12.04.1 [63.1 kB]
    Get:3 http://archive.ubuntu.com/ubuntu/ precise/main libschroedinger-1.0-0 amd64 1.0.11-1 [287 kB]
    Get:4 http://security.ubuntu.com/ubuntu/ precise-security/main libavcodec53 amd64 4:0.8.6-0ubuntu0.12.04.1 [2,921 kB]
    Get:5 http://archive.ubuntu.com/ubuntu/ precise/main libva1 amd64 1.0.15-4 [38.7 kB]
    Get:6 http://archive.ubuntu.com/ubuntu/ precise/main libvpx1 amd64 1.0.0-1 [269 kB]
    Get:7 http://archive.ubuntu.com/ubuntu/ precise/main libqtassistantclient4 amd64 4.6.3-3ubuntu2 [14.1 kB]
    Get:8 http://archive.ubuntu.com/ubuntu/ precise/main libqtwebkit4 amd64 2.2.1-1ubuntu4 [6,229 kB]
    Get:9 http://security.ubuntu.com/ubuntu/ precise-security/main libavformat53 amd64 4:0.8.6-0ubuntu0.12.04.1 [495 kB]
    Get:10 http://security.ubuntu.com/ubuntu/ precise-security/main libqt4-designer amd64 4:4.8.1-0ubuntu4.4 [3,608 kB]
    Get:11 http://archive.ubuntu.com/ubuntu/ precise/main libfftw3-3 amd64 3.3-1ubuntu1 [1,611 kB]
    Get:12 http://security.ubuntu.com/ubuntu/ precise-security/main libqt4-help amd64 4:4.8.1-0ubuntu4.4 [200 kB]
    Get:13 http://security.ubuntu.com/ubuntu/ precise-security/main libqt4-scripttools amd64 4:4.8.1-0ubuntu4.4 [220 kB]
    Get:14 http://archive.ubuntu.com/ubuntu/ precise/universe libofa0 amd64 0.9.3-4 [55.8 kB]
    Get:15 http://security.ubuntu.com/ubuntu/ precise-security/main libqt4-test amd64 4:4.8.1-0ubuntu4.4 [60.2 kB]
    Get:16 http://archive.ubuntu.com/ubuntu/ precise/main python-sip amd64 4.13.2-1 [74.1 kB]
    Get:17 http://archive.ubuntu.com/ubuntu/ precise/main python-qt4 amd64 4.9.1-2ubuntu1 [3,113 kB]
    Get:18 http://archive.ubuntu.com/ubuntu/ precise/main python-mutagen all 1.20-1ubuntu1 [84.5 kB]
    Get:19 http://archive.ubuntu.com/ubuntu/ precise/universe picard amd64 0.16-2 [886 kB]
    Fetched 20.3 MB in 2s (7,144 kB/s)
    Selecting previously unselected package libavutil51.
    (Reading database ... 166994 files and directories currently installed.)
    Unpacking libavutil51 (from .../libavutil51_4%3a0.8.6-0ubuntu0.12.04.1_amd64.deb) ...
    Selecting previously unselected package libgsm1.
    Unpacking libgsm1 (from .../libgsm1_1.0.13-3_amd64.deb) ...
    Selecting previously unselected package libschroedinger-1.0-0.
    Unpacking libschroedinger-1.0-0 (from .../libschroedinger-1.0-0_1.0.11-1_amd64.deb) ...
    Selecting previously unselected package libva1.
    Unpacking libva1 (from .../libva1_1.0.15-4_amd64.deb) ...
    Selecting previously unselected package libvpx1.
    Unpacking libvpx1 (from .../libvpx1_1.0.0-1_amd64.deb) ...
    Selecting previously unselected package libavcodec53.
    Unpacking libavcodec53 (from .../libavcodec53_4%3a0.8.6-0ubuntu0.12.04.1_amd64.deb) ...
    Selecting previously unselected package libavformat53.
    Unpacking libavformat53 (from .../libavformat53_4%3a0.8.6-0ubuntu0.12.04.1_amd64.deb) ...
    Selecting previously unselected package libqt4-designer.
    Unpacking libqt4-designer (from .../libqt4-designer_4%3a4.8.1-0ubuntu4.4_amd64.deb) ...
    Selecting previously unselected package libqt4-help.
    Unpacking libqt4-help (from .../libqt4-help_4%3a4.8.1-0ubuntu4.4_amd64.deb) ...
    Selecting previously unselected package libqt4-scripttools.
    Unpacking libqt4-scripttools (from .../libqt4-scripttools_4%3a4.8.1-0ubuntu4.4_amd64.deb) ...
    Selecting previously unselected package libqt4-test.
    Unpacking libqt4-test (from .../libqt4-test_4%3a4.8.1-0ubuntu4.4_amd64.deb) ...
    Selecting previously unselected package libqtassistantclient4.
    Unpacking libqtassistantclient4 (from .../libqtassistantclient4_4.6.3-3ubuntu2_amd64.deb) ...
    Selecting previously unselected package libqtwebkit4.
    Unpacking libqtwebkit4 (from .../libqtwebkit4_2.2.1-1ubuntu4_amd64.deb) ...
    Selecting previously unselected package libfftw3-3.
    Unpacking libfftw3-3 (from .../libfftw3-3_3.3-1ubuntu1_amd64.deb) ...
    Selecting previously unselected package libofa0.
    Unpacking libofa0 (from .../libofa0_0.9.3-4_amd64.deb) ...
    Selecting previously unselected package python-sip.
    Unpacking python-sip (from .../python-sip_4.13.2-1_amd64.deb) ...
    Selecting previously unselected package python-qt4.
    Unpacking python-qt4 (from .../python-qt4_4.9.1-2ubuntu1_amd64.deb) ...
    Selecting previously unselected package python-mutagen.
    Unpacking python-mutagen (from .../python-mutagen_1.20-1ubuntu1_all.deb) ...
    Selecting previously unselected package picard.
    Unpacking picard (from .../picard_0.16-2_amd64.deb) ...
    Processing triggers for man-db ...
    Processing triggers for hicolor-icon-theme ...
    Processing triggers for bamfdaemon ...
    Rebuilding /usr/share/applications/bamf.index...
    Processing triggers for desktop-file-utils ...
    Processing triggers for gnome-menus ...
    Setting up libavutil51 (4:0.8.6-0ubuntu0.12.04.1) ...
    Setting up libgsm1 (1.0.13-3) ...
    Setting up libschroedinger-1.0-0 (1.0.11-1) ...
    Setting up libva1 (1.0.15-4) ...
    Setting up libvpx1 (1.0.0-1) ...
    Setting up libavcodec53 (4:0.8.6-0ubuntu0.12.04.1) ...
    Setting up libavformat53 (4:0.8.6-0ubuntu0.12.04.1) ...
    Setting up libqt4-designer (4:4.8.1-0ubuntu4.4) ...
    Setting up libqt4-help (4:4.8.1-0ubuntu4.4) ...
    Setting up libqt4-scripttools (4:4.8.1-0ubuntu4.4) ...
    Setting up libqt4-test (4:4.8.1-0ubuntu4.4) ...
    Setting up libqtassistantclient4 (4.6.3-3ubuntu2) ...
    Setting up libqtwebkit4 (2.2.1-1ubuntu4) ...
    Setting up libfftw3-3 (3.3-1ubuntu1) ...
    Setting up libofa0 (0.9.3-4) ...
    Setting up python-sip (4.13.2-1) ...
    Setting up python-qt4 (4.9.1-2ubuntu1) ...
    Setting up python-mutagen (1.20-1ubuntu1) ...
    Setting up picard (0.16-2) ...
    Processing triggers for libc-bin ...
    ldconfig deferred processing now taking place

  • #2
    You may not have installed the right program.

    Plain picard referrs to a "MusicBrainz audiofiles tagger" in ubuntu repository.

    picard-tools is what you need https://launchpad.net/ubuntu/+source...d-tools/1.46-1

    The version of picard tools in ubuntu repository may be older (v. 1.46). Once you install that package it should be under /usr/bin/picard-tools.

    Why don't you download them from source here: http://sourceforge.net/projects/picard/files/
    Last edited by GenoMax; 07-15-2013, 06:39 AM.

    Comment


    • #3
      picard installation on ububtu 12.0.4

      so:
      Code:
      sudo apt-get install picard-tools
      How do I uninstall the previous picard? Thanks

      Comment


      • #4
        Originally posted by cmccabe View Post
        so:
        Code:
        sudo apt-get install picard-tools
        Yes.

        Originally posted by cmccabe View Post
        How do I uninstall the previous picard? Thanks
        Like this

        Code:
        sudo apt-get remove picard

        Comment


        • #5
          picard installation on ubuntu 12.0.4

          Seems like picard installed but I do not see a directory: Thank you.
          dnascopev@ubuntu:~$ sudo apt-get install picard-tools
          Reading package lists... Done
          Building dependency tree
          Reading state information... Done
          The following packages were automatically installed and are no longer required:
          libavutil51 libqt4-test libqt4-designer python-mutagen libfftw3-3
          libavcodec53 libqt4-help python-qt4 python-sip libvpx1 libgsm1
          libqtassistantclient4 libschroedinger-1.0-0 libavformat53 libva1
          libqt4-scripttools libqtwebkit4 libofa0
          Use 'apt-get autoremove' to remove them.
          The following extra packages will be installed:
          ca-certificates-java icedtea-6-jre-cacao icedtea-6-jre-jamvm icedtea-netx
          icedtea-netx-common java-common libatk-wrapper-java libatk-wrapper-java-jni
          libgif4 libnss3-1d libsam-java openjdk-6-jre openjdk-6-jre-headless
          openjdk-6-jre-lib ttf-dejavu-extra tzdata-java
          Suggested packages:
          default-jre equivs icedtea-plugin sun-java6-fonts fonts-ipafont-gothic
          fonts-ipafont-mincho ttf-telugu-fonts ttf-oriya-fonts ttf-kannada-fonts
          ttf-bengali-fonts r-base-core
          The following NEW packages will be installed:
          ca-certificates-java icedtea-6-jre-cacao icedtea-6-jre-jamvm icedtea-netx
          icedtea-netx-common java-common libatk-wrapper-java libatk-wrapper-java-jni
          libgif4 libnss3-1d libsam-java openjdk-6-jre openjdk-6-jre-headless
          openjdk-6-jre-lib picard-tools ttf-dejavu-extra tzdata-java
          0 upgraded, 17 newly installed, 0 to remove and 2 not upgraded.
          Need to get 8,186 B/38.0 MB of archives.
          After this operation, 99.4 MB of additional disk space will be used.
          Do you want to continue [Y/n]? y
          Get:1 http://archive.ubuntu.com/ubuntu/ precise/main ca-certificates-java all 20110912ubuntu6 [8,186 B]
          Fetched 8,186 B in 0s (41.6 kB/s)
          Selecting previously unselected package openjdk-6-jre-lib.
          (Reading database ... 167326 files and directories currently installed.)
          Unpacking openjdk-6-jre-lib (from .../openjdk-6-jre-lib_6b27-1.12.5-0ubuntu0.12.04.1_all.deb) ...
          Selecting previously unselected package libnss3-1d.
          Unpacking libnss3-1d (from .../libnss3-1d_3.14.3-0ubuntu0.12.04.1_amd64.deb) ...
          Selecting previously unselected package ca-certificates-java.
          Unpacking ca-certificates-java (from .../ca-certificates-java_20110912ubuntu6_all.deb) ...
          Selecting previously unselected package tzdata-java.
          Unpacking tzdata-java (from .../tzdata-java_2012e-0ubuntu0.12.04.1_all.deb) ...
          Selecting previously unselected package java-common.
          Unpacking java-common (from .../java-common_0.43ubuntu2_all.deb) ...
          Selecting previously unselected package openjdk-6-jre-headless.
          Unpacking openjdk-6-jre-headless (from .../openjdk-6-jre-headless_6b27-1.12.5-0ubuntu0.12.04.1_amd64.deb) ...
          Selecting previously unselected package libgif4.
          Unpacking libgif4 (from .../libgif4_4.1.6-9ubuntu1_amd64.deb) ...
          Selecting previously unselected package openjdk-6-jre.
          Unpacking openjdk-6-jre (from .../openjdk-6-jre_6b27-1.12.5-0ubuntu0.12.04.1_amd64.deb) ...
          Selecting previously unselected package libatk-wrapper-java.
          Unpacking libatk-wrapper-java (from .../libatk-wrapper-java_0.30.4-0ubuntu2_all.deb) ...
          Selecting previously unselected package libatk-wrapper-java-jni.
          Unpacking libatk-wrapper-java-jni (from .../libatk-wrapper-java-jni_0.30.4-0ubuntu2_amd64.deb) ...
          Selecting previously unselected package libsam-java.
          Unpacking libsam-java (from .../libsam-java_1.46-1build1_all.deb) ...
          Selecting previously unselected package picard-tools.
          Unpacking picard-tools (from .../picard-tools_1.46-1build1_all.deb) ...
          Selecting previously unselected package ttf-dejavu-extra.
          Unpacking ttf-dejavu-extra (from .../ttf-dejavu-extra_2.33-2ubuntu1_all.deb) ...
          Selecting previously unselected package icedtea-6-jre-cacao.
          Unpacking icedtea-6-jre-cacao (from .../icedtea-6-jre-cacao_6b27-1.12.5-0ubuntu0.12.04.1_amd64.deb) ...
          Selecting previously unselected package icedtea-6-jre-jamvm.
          Unpacking icedtea-6-jre-jamvm (from .../icedtea-6-jre-jamvm_6b27-1.12.5-0ubuntu0.12.04.1_amd64.deb) ...
          Selecting previously unselected package icedtea-netx-common.
          Unpacking icedtea-netx-common (from .../icedtea-netx-common_1.2.3-0ubuntu0.12.04.2_all.deb) ...
          Selecting previously unselected package icedtea-netx.
          Unpacking icedtea-netx (from .../icedtea-netx_1.2.3-0ubuntu0.12.04.2_amd64.deb) ...
          Processing triggers for doc-base ...
          Processing 2 added doc-base files...
          Processing triggers for man-db ...
          Processing triggers for bamfdaemon ...
          Rebuilding /usr/share/applications/bamf.index...
          Processing triggers for desktop-file-utils ...
          Processing triggers for gnome-menus ...
          Processing triggers for hicolor-icon-theme ...
          Processing triggers for fontconfig ...
          Setting up libnss3-1d (3.14.3-0ubuntu0.12.04.1) ...
          Setting up tzdata-java (2012e-0ubuntu0.12.04.1) ...
          Setting up java-common (0.43ubuntu2) ...
          Setting up libgif4 (4.1.6-9ubuntu1) ...
          Setting up libsam-java (1.46-1build1) ...
          Setting up ttf-dejavu-extra (2.33-2ubuntu1) ...
          Setting up icedtea-netx-common (1.2.3-0ubuntu0.12.04.2) ...
          Setting up openjdk-6-jre-headless (6b27-1.12.5-0ubuntu0.12.04.1) ...
          update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/java to provide /usr/bin/java (java) in auto mode.
          update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode.
          update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode.
          update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode.
          update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode.
          update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode.
          update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/orbd to provide /usr/bin/orbd (orbd) in auto mode.
          update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/servertool to provide /usr/bin/servertool (servertool) in auto mode.
          update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/tnameserv to provide /usr/bin/tnameserv (tnameserv) in auto mode.
          update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode.
          Setting up ca-certificates-java (20110912ubuntu6) ...
          Adding debian:Sonera_Class_1_Root_CA.pem
          Adding debian:Certum_Trusted_Network_CA.pem
          Adding debian:spi-ca-2003.pem
          Adding debian:Equifax_Secure_CA.pem
          Adding debian:Thawte_Server_CA.pem
          Adding debian:Network_Solutions_Certificate_Authority.pem
          Adding debian:ePKI_Root_Certification_Authority.pem
          Adding debian:Staat_der_Nederlanden_Root_CA.pem
          Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem
          Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem
          Adding debian:Taiwan_GRCA.pem
          Adding debian:WellsSecure_Public_Root_Certificate_Authority.pem
          Adding debian:ValiCert_Class_1_VA.pem
          Adding debian:TC_TrustCenter_Class_3_CA_II.pem
          Adding debian:Sonera_Class_2_Root_CA.pem
          Adding debian:Comodo_Trusted_Services_root.pem
          Adding debian:Security_Communication_EV_RootCA1.pem
          Adding debian:Entrust_Root_Certification_Authority.pem
          Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G3.pem
          Adding debian:Certinomis_-_Autorité_Racine.pem
          Adding debian:GeoTrust_Universal_CA_2.pem
          Adding debian:Verisign_Class_4_Public_Primary_Certification_Authority_-_G2.pem
          Adding debian:GeoTrust_Primary_Certification_Authority.pem
          Adding debian:Swisscom_Root_CA_1.pem
          Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem
          Adding debian:TWCA_Root_Certification_Authority.pem
          Adding debian:ACEDICOM_Root.pem
          Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority.pem
          Adding debian:RSA_Root_Certificate_1.pem
          Adding debian:QuoVadis_Root_CA_3.pem
          Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
          Adding debian:IGC_A.pem
          Adding debian:TÜBİTAK_UEKAE_Kök_Sertifika_Hizmet_Sağlayıcısı_-_Sürüm_3.pem
          Adding debian:TURKTRUST_Certificate_Services_Provider_Root_1.pem
          Adding debian:Camerfirma_Global_Chambersign_Root.pem
          Adding debian:AddTrust_External_Root.pem
          Adding debian:cacert.org.pem
          Adding debian:thawte_Primary_Root_CA_-_G3.pem
          Adding debian:TC_TrustCenter__Germany__Class_2_CA.pem
          Adding debian:NetLock_Notary_=Class_A=_Root.pem
          Adding debian:Izenpe.com.pem
          Adding debian:RSA_Security_2048_v3.pem
          Adding debian:TDC_OCES_Root_CA.pem
          Adding debian:Starfield_Class_2_CA.pem
          Adding debianST_ACES_CA_X6.pem
          Adding debian:AddTrust_Qualified_Certificates_Root.pem
          Adding debian:SecureSign_RootCA11.pem
          Adding debianigital_Signature_Trust_Co._Global_CA_3.pem
          Adding debian:XRamp_Global_CA_Root.pem
          Adding debian:America_Online_Root_Certification_Authority_2.pem
          Adding debian:Thawte_Premium_Server_CA.pem
          Adding debian:AddTrust_Low-Value_Services_Root.pem
          Adding debian:Juur-SK.pem
          Adding debian:Cybertrust_Global_Root.pem
          Adding debian:COMODO_ECC_Certification_Authority.pem
          Adding debianigiCert_Assured_ID_Root_CA.pem
          Adding debian:spi-cacert-2008.pem
          Adding debian:QuoVadis_Root_CA_2.pem
          Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G3.pem
          Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority_-_G2.pem
          Adding debian:Camerfirma_Chambers_of_Commerce_Root.pem
          Adding debian:GlobalSign_Root_CA.pem
          Adding debian:Baltimore_CyberTrust_Root.pem
          Adding debian:Buypass_Class_2_CA_1.pem
          Adding debian:GeoTrust_Global_CA.pem
          Adding debian:SwissSign_Silver_CA_-_G2.pem
          Adding debianigiCert_High_Assurance_EV_Root_CA.pem
          Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem
          Adding debian:Entrust.net_Secure_Server_CA.pem
          Adding debian:AddTrust_Public_Services_Root.pem
          Adding debian:certSIGN_ROOT_CA.pem
          Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
          Adding debian:ComSign_CA.pem
          Adding debian:Comodo_AAA_Services_root.pem
          Adding debian:TC_TrustCenter__Germany__Class_3_CA.pem
          Adding debianigital_Signature_Trust_Co._Global_CA_1.pem
          Adding debian:Equifax_Secure_Global_eBusiness_CA.pem
          Adding debian:ComSign_Secured_CA.pem
          Adding debian:E-Guven_Kok_Elektronik_Sertifika_Hizmet_Saglayicisi.pem
          Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority.pem
          Adding debian:GeoTrust_Global_CA_2.pem
          Adding debian:VeriSign_Universal_Root_Certification_Authority.pem
          Adding debian:GlobalSign_Root_CA_-_R2.pem
          Adding debian:Verisign_Class_4_Public_Primary_Certification_Authority_-_G3.pem
          Adding debian:TC_TrustCenter_Universal_CA_III.pem
          Adding debian:Global_Chambersign_Root_-_2008.pem
          Adding debian:TDC_Internet_Root_CA.pem
          Adding debian:GlobalSign_Root_CA_-_R3.pem
          Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem
          Adding debian:AffirmTrust_Commercial.pem
          Adding debian:UTN_USERFirst_Email_Root_CA.pem
          Adding debian:GTE_CyberTrust_Global_Root.pem
          Adding debian:Chambers_of_Commerce_Root_-_2008.pem
          Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
          Adding debian:QuoVadis_Root_CA.pem
          Adding debian:SecureTrust_CA.pem
          Adding debian:UbuntuOne-Go_Daddy_CA.pem
          Adding debian:EBG_Elektronik_Sertifika_Hizmet_Sağlayıcısı.pem
          Adding debian:ApplicationCA_-_Japanese_Government.pem
          Adding debian:Wells_Fargo_Root_CA.pem
          Adding debianST_Root_CA_X3.pem
          Adding debian:AC_Raíz_Certicámara_S.A..pem
          Adding debian:StartCom_Certification_Authority.pem
          Adding debian:CNNIC_ROOT.pem
          Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
          Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G2.pem
          Adding debian:UTN_USERFirst_Hardware_Root_CA.pem
          Adding debian:Firmaprofesional_Root_CA.pem
          Adding debian:AffirmTrust_Premium_ECC.pem
          Adding debian:Verisign_Class_2_Public_Primary_Certification_Authority.pem
          Adding debian:Visa_eCommerce_Root.pem
          Adding debian:NetLock_Express_=Class_C=_Root.pem
          Adding debian:A-Trust-nQual-03.pem
          Adding debianeutsche_Telekom_Root_CA_2.pem
          Adding debian:Certplus_Class_2_Primary_CA.pem
          Adding debian:Microsec_e-Szigno_Root_CA.pem
          Adding debian:ca.pem
          Adding debian:TC_TrustCenter_Class_2_CA_II.pem
          Adding debian:Certum_Root_CA.pem
          Adding debian:ValiCert_Class_2_VA.pem
          Adding debian:Verisign_Class_1_Public_Primary_Certification_Authority_-_G2.pem
          Adding debian:NetLock_Business_=Class_B=_Root.pem
          Adding debianigiCert_Global_Root_CA.pem
          Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2.pem
          Adding debian:Go_Daddy_Class_2_CA.pem
          Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
          Adding debian:GeoTrust_Universal_CA.pem
          Adding debian:CA_Disig.pem
          Adding debian:Hongkong_Post_Root_CA_1.pem
          Adding debian:S-TRUST_Authentication_and_Encryption_Root_CA_2005_PN.pem
          Adding debian:thawte_Primary_Root_CA_-_G2.pem
          Adding debian:America_Online_Root_Certification_Authority_1.pem
          Adding debian:SwissSign_Gold_CA_-_G2.pem
          Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
          Adding debian:ssl-cert-snakeoil.pem
          Adding debian:COMODO_Certification_Authority.pem
          Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem
          Adding debian:UbuntuOne-Go_Daddy_Class_2_CA.pem
          Adding debian:Equifax_Secure_eBusiness_CA_1.pem
          Adding debian:AffirmTrust_Networking.pem
          Adding debian:Equifax_Secure_eBusiness_CA_2.pem
          Adding debian:Security_Communication_Root_CA.pem
          Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem
          Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem
          Adding debian:Buypass_Class_3_CA_1.pem
          Adding debian:Comodo_Secure_Services_root.pem
          Adding debian:thawte_Primary_Root_CA.pem
          Adding debian:UTN_DATACorp_SGC_Root_CA.pem
          Adding debian:Secure_Global_CA.pem
          Adding debian:Root_CA_Generalitat_Valenciana.pem
          Adding debian:TC_TrustCenter_Universal_CA_I.pem
          Adding debian:NetLock_Qualified_=Class_QA=_Root.pem
          Adding debian:AffirmTrust_Premium.pem
          Adding debian:SwissSign_Platinum_CA_-_G2.pem
          Adding debian:Certigna.pem
          done.
          Setting up libatk-wrapper-java (0.30.4-0ubuntu2) ...
          Setting up icedtea-6-jre-cacao (6b27-1.12.5-0ubuntu0.12.04.1) ...
          Setting up icedtea-6-jre-jamvm (6b27-1.12.5-0ubuntu0.12.04.1) ...
          Setting up openjdk-6-jre-lib (6b27-1.12.5-0ubuntu0.12.04.1) ...
          Setting up libatk-wrapper-java-jni (0.30.4-0ubuntu2) ...
          Setting up openjdk-6-jre (6b27-1.12.5-0ubuntu0.12.04.1) ...
          update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/policytool to provide /usr/bin/policytool (policytool) in auto mode.
          Setting up picard-tools (1.46-1build1) ...
          Setting up icedtea-netx (1.2.3-0ubuntu0.12.04.2) ...
          update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/javaws to provide /usr/bin/javaws (javaws) in auto mode.
          update-alternatives: using /usr/lib/jvm/java-6-openjdk-amd64/jre/bin/itweb-settings to provide /usr/bin/itweb-settings (itweb-settings) in auto mode.
          Processing triggers for libc-bin ...
          ldconfig deferred processing now taking place
          dnascopev@ubuntu:~$

          Comment


          • #6
            Look for picard-tools under /usr/bin/picard-tools.

            You can run the program by doing

            Code:
            picard-tools COMMAND options
            Do

            Code:
            man picard-tools
            to get help on available commands.

            Comment


            • #7
              picard installation on ubuntu 12.0.4

              Thank you very much.

              Comment

              Latest Articles

              Collapse

              • seqadmin
                Current Approaches to Protein Sequencing
                by seqadmin


                Proteins are often described as the workhorses of the cell, and identifying their sequences is key to understanding their role in biological processes and disease. Currently, the most common technique used to determine protein sequences is mass spectrometry. While still a valuable tool, mass spectrometry faces several limitations and requires a highly experienced scientist familiar with the equipment to operate it. Additionally, other proteomic methods, like affinity assays, are constrained...
                04-04-2024, 04:25 PM
              • seqadmin
                Strategies for Sequencing Challenging Samples
                by seqadmin


                Despite advancements in sequencing platforms and related sample preparation technologies, certain sample types continue to present significant challenges that can compromise sequencing results. Pedro Echave, Senior Manager of the Global Business Segment at Revvity, explained that the success of a sequencing experiment ultimately depends on the amount and integrity of the nucleic acid template (RNA or DNA) obtained from a sample. “The better the quality of the nucleic acid isolated...
                03-22-2024, 06:39 AM

              ad_right_rmr

              Collapse

              News

              Collapse

              Topics Statistics Last Post
              Started by seqadmin, 04-11-2024, 12:08 PM
              0 responses
              26 views
              0 likes
              Last Post seqadmin  
              Started by seqadmin, 04-10-2024, 10:19 PM
              0 responses
              29 views
              0 likes
              Last Post seqadmin  
              Started by seqadmin, 04-10-2024, 09:21 AM
              0 responses
              25 views
              0 likes
              Last Post seqadmin  
              Started by seqadmin, 04-04-2024, 09:00 AM
              0 responses
              52 views
              0 likes
              Last Post seqadmin  
              Working...
              X