Seqanswers Leaderboard Ad

Collapse
X
 
  • Filter
  • Time
  • Show
Clear All
new posts
  • pari_89
    Member
    • Apr 2013
    • 55

    QUAST GFF files for genes

    Hi everyone, I am using QUAST to evaluate my assemblies. I have two annotated reference genomes and they are found in genbank. QUAST takes gff files for genes and operons and I would like to know whether these files are present for S.aureus MRSA252 and Bacillus subtilis strain 168.

    Can you tell me where to find them?

    Thank you very much.
  • GenoMax
    Senior Member
    • Feb 2008
    • 7142

    #2
    Verify that these are the correct strains (right-click on links below and "save as").

    B. subtilis 168: ftp://ftp.ncbi.nih.gov/genomes/Bacte.../NC_000964.gff

    S. aureus MRSA252: ftp://ftp.ncbi.nih.gov/genomes/Bacte.../NC_002952.gff
    Last edited by GenoMax; 07-15-2013, 05:30 PM.

    Comment

    Latest Articles

    Collapse

    • seqadmin
      New Genomics Tools and Methods Shared at AGBT 2025
      by seqadmin


      This year’s Advances in Genome Biology and Technology (AGBT) General Meeting commemorated the 25th anniversary of the event at its original venue on Marco Island, Florida. While this year’s event didn’t include high-profile musical performances, the industry announcements and cutting-edge research still drew the attention of leading scientists.

      The Headliner
      The biggest announcement was Roche stepping back into the sequencing platform market. In the years since...
      03-03-2025, 01:39 PM
    • seqadmin
      Investigating the Gut Microbiome Through Diet and Spatial Biology
      by seqadmin




      The human gut contains trillions of microorganisms that impact digestion, immune functions, and overall health1. Despite major breakthroughs, we’re only beginning to understand the full extent of the microbiome’s influence on health and disease. Advances in next-generation sequencing and spatial biology have opened new windows into this complex environment, yet many questions remain. This article highlights two recent studies exploring how diet influences microbial...
      02-24-2025, 06:31 AM

    ad_right_rmr

    Collapse

    News

    Collapse

    Topics Statistics Last Post
    Started by seqadmin, Today, 05:03 AM
    0 responses
    15 views
    0 reactions
    Last Post seqadmin  
    Started by seqadmin, Yesterday, 07:27 AM
    0 responses
    13 views
    0 reactions
    Last Post seqadmin  
    Started by seqadmin, 03-18-2025, 12:50 PM
    0 responses
    15 views
    0 reactions
    Last Post seqadmin  
    Started by seqadmin, 03-03-2025, 01:15 PM
    0 responses
    185 views
    0 reactions
    Last Post seqadmin  
    Working...