Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • vivek_
    replied


    Try Variant Effect Predictor from Ensembl tools. (Not sure if this was what GenoMax was referring to as well).

    Its pretty comprehensive and you can also check the mutation frequency in 1000 genomes etc if you are looking for a rare variant.

    Leave a comment:


  • GenoMax
    replied
    You could also try Ensembl BioMart (I assume you are working with human rs ID's) and the Ensembl variation database to extract the information you need.

    Leave a comment:


  • bruce01
    replied
    dbSNP will give position of SNP. Then you can find which exon that position relates to in a GTF.

    Leave a comment:


  • venkat.boffin
    started a topic Find SNP location on exon

    Find SNP location on exon

    Hi all,

    I have few SNP rs id's all are coding in exons, i want find the location of SNPs in which exons they are present with respect to its gene.

    Help me out..

Latest Articles

Collapse

  • seqadmin
    Recent Developments in Metagenomics
    by seqadmin





    Metagenomics has improved the way researchers study microorganisms across diverse environments. Historically, studying microorganisms relied on culturing them in the lab, a method that limits the investigation of many species since most are unculturable1. Metagenomics overcomes these issues by allowing the study of microorganisms regardless of their ability to be cultured or the environments they inhabit. Over time, the field has evolved, especially with the advent...
    09-23-2024, 06:35 AM
  • seqadmin
    Understanding Genetic Influence on Infectious Disease
    by seqadmin




    During the COVID-19 pandemic, scientists observed that while some individuals experienced severe illness when infected with SARS-CoV-2, others were barely affected. These disparities left researchers and clinicians wondering what causes the wide variations in response to viral infections and what role genetics plays.

    Jean-Laurent Casanova, M.D., Ph.D., Professor at Rockefeller University, is a leading expert in this crossover between genetics and infectious...
    09-09-2024, 10:59 AM

ad_right_rmr

Collapse

News

Collapse

Topics Statistics Last Post
Started by seqadmin, 10-02-2024, 04:51 AM
0 responses
13 views
0 likes
Last Post seqadmin  
Started by seqadmin, 10-01-2024, 07:10 AM
0 responses
21 views
0 likes
Last Post seqadmin  
Started by seqadmin, 09-30-2024, 08:33 AM
0 responses
25 views
0 likes
Last Post seqadmin  
Started by seqadmin, 09-26-2024, 12:57 PM
0 responses
18 views
0 likes
Last Post seqadmin  
Working...
X