outputs from TGICL/CAP3

[cemonat]

Hello everyone,

I think I have a problem with TGICL/CAP3 because I don't have any '.ace' file in my outputs.

I run this command :

qsub -b Y -N TGICL -q bigmem.q "/usr/local/tgicl_linux/tgicl /data/projects/assembling-glab/ABYSS/CG14/CG14-29463-sc_sorted.fa"

The error file tells me that

tgicl (/data/projects/assembling-glab/ABYSS/CG14/CG14-29463-sc_sorted.fa) finished on machine node3.alineos.net
                 in /home/cecmonat, without a detectable error.

And the err.log tells me that :

>>> --- Initialization [/data/projects/assembling-glab/ABYSS/CG14/CG14-29463-sc_sorted.fa] started at Aug  8 15:19:15 2013
tgicl running options: 
tgicl /data/projects/assembling-glab/ABYSS/CG14/CG14-29463-sc_sorted.fa
 Standard log file: tgicl_CG14-29463-sc_sorted.fa.log
 Error log file:    err_tgicl_CG14-29463-sc_sorted.fa.log
 Using 1 CPUs for clustering and assembly
 Path is : /usr/local/tgicl_linux/bin:/tmp/29990.1.bigmem.q:/usr/local/bin:/bin:/usr/bin 
-= Rebuilding /data/projects/assembling-glab/ABYSS/CG14/CG14-29463-sc_sorted.fa indices =-
64988 entries from file /data/projects/assembling-glab/ABYSS/CG14/CG14-29463-sc_sorted.fa were indexed in file /data/projects/assembling-glab/ABYSS/CG14/CG14-29463-sc_sorted.fa.cidx
>>> --- Clustering [/data/projects/assembling-glab/ABYSS/CG14/CG14-29463-sc_sorted.fa] started at Aug  8 15:19:36 2013
  Launching distributed clustering: 
 psx -p 1  -n 1000 -i /data/projects/assembling-glab/ABYSS/CG14/CG14-29463-sc_sorted.fa -d cluster -C '/data/projects/assembling-glab/ABYSS/CG14/CG14-29463-sc_sorted.fa:94:30:40' -c 'tgicl_cluster.psx'
WAITING for all children to finish before starting last child!
WAITING for all children to finish!
<<< --- Clustering [/data/projects/assembling-glab/ABYSS/CG14/CG14-29463-sc_sorted.fa] finished at Aug  8 17:46:56 2013
OVL=20
Total t-clusters: 1024 
Largest cluster has 52675 nodes
*** all done ***
The clusters are stored in file 'CG14-29463-sc_sorted.fa_clusters'.

>>> --- Assembling [/data/projects/assembling-glab/ABYSS/CG14/CG14-29463-sc_sorted.fa] started at Aug  8 17:47:01 2013
WAITING for all children to finish before starting last child!
WAITING for all children to finish!
<<< --- Assembling [/data/projects/assembling-glab/ABYSS/CG14/CG14-29463-sc_sorted.fa] finished at Aug  8 18:11:23 2013
*** tgicl [/data/projects/assembling-glab/ABYSS/CG14/CG14-29463-sc_sorted.fa] finished ***

As outputs, I have :
TGICL.error
TGICL.output
tgicl.fa.log
masked.lst
hitsort.Z
formatdb.log
err_tgicl.fa.log
and all the DB annexes files

any idea ?
Thank's advance