Hello SeqAnswers Community,
I am interested in using SEAS to do pathway analysis of my differentially expressed genes. I think I have installed all of the necessary dependencies, but I do not understand the following installation instruction (below). After extracting the files from seas-src-1.0.tar.gz, I couldn't find the "Seas.exe.config" or "appSettings" file in any of the extracted folders. So where is the file?
3. Change the app settings in Seas.exe.config (appSettings).
Example:
<appSettings>
<add key="FastaPath" value="data/fasta" />
<add key="AssocPath" value="data/assoc" />
<add key="RscriptPath" value="Rscript" />
<add key="GseaPath" value="thirdparty/R/GSEA.R" />
<add key="BlastPath" value="blastall" />
</appSettings>
Thank you and God bless,
Jason
I am interested in using SEAS to do pathway analysis of my differentially expressed genes. I think I have installed all of the necessary dependencies, but I do not understand the following installation instruction (below). After extracting the files from seas-src-1.0.tar.gz, I couldn't find the "Seas.exe.config" or "appSettings" file in any of the extracted folders. So where is the file?
3. Change the app settings in Seas.exe.config (appSettings).
Example:
<appSettings>
<add key="FastaPath" value="data/fasta" />
<add key="AssocPath" value="data/assoc" />
<add key="RscriptPath" value="Rscript" />
<add key="GseaPath" value="thirdparty/R/GSEA.R" />
<add key="BlastPath" value="blastall" />
</appSettings>
Thank you and God bless,
Jason
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