Just wondering if cuffdiff uses Sam file or bam file as input.
The reason for my post is because in my previous run, the output of cuffdiff says no differential expression is performed on my data. So I wonder if it is because I am providing bam instead of Sam as input.
The reason for my post is because in my previous run, the output of cuffdiff says no differential expression is performed on my data. So I wonder if it is because I am providing bam instead of Sam as input.
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