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  • fireLog2
    Member
    • Jul 2013
    • 10

    #1

    Is it possible to run PfamScan direct on DNA sequence?

    Hello,
    is it possible to run a local installed Pfam prediction (PfamScan) direct on DNA sequence?

    There is a search field on the homepage to do so (http://pfam.sanger.ac.uk/search). But I couldn't get it to run on a local server with DNA. It seems that only protein sequence prediction works.

    Did I miss something?

    I don't want to translate it to all 6 reading frames
  • GenoMax
    Senior Member
    • Feb 2008
    • 7142

    #2
    This help FAQ seems to indicate so: http://pfam.sanger.ac.uk/help#tabview=tab3 Question 8 in the navigation box on right.

    You will need to install the wise2 package.ftp://ftp.ebi.ac.uk/pub/software/unix/wise2/

    Comment

    • fireLog2
      Member
      • Jul 2013
      • 10

      #3
      Thanks you for your fast answer!

      I will dig further... I think I already have wise2 installed. But I didn't know that this can be used.

      Comment

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