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  • SNPs confusion?

    I have four samples from diff animals. I used the novo snp to do the snp analysis.

    First time, I put all the sample data together and do the align. There are 5 snps found (QS>25).

    Second time, when I do the align separately. No SNPs found at all. Any ideas/thoughts?

    thx

  • #2
    Im sorry but unless you give us information about what you did, we will have no way of helping you.

    What commands did you run? Go through step-by-step. What reference sequence were you using? etc etc

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