SNPs confusion?

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arkilis

Senior Member

Join Date: Jul 2013

Posts: 119
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#1

SNPs confusion?

08-20-2013, 04:37 PM

I have four samples from diff animals. I used the novo snp to do the snp analysis.

First time, I put all the sample data together and do the align. There are 5 snps found (QS>25).

Second time, when I do the align separately. No SNPs found at all. Any ideas/thoughts?

thx
Tags: snp, snp detection
jimmybee

Senior Member

Join Date: Sep 2010

Posts: 119
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#2

08-21-2013, 02:13 AM

Im sorry but unless you give us information about what you did, we will have no way of helping you.

What commands did you run? Go through step-by-step. What reference sequence were you using? etc etc
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