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  • jflowers002
    Junior Member
    • Jan 2013
    • 6
    #1

    Orthomcl problems

    I am trying to run Orthomcl, but when I try the first step to load the blast results into mysql (orthomclLoadBlast), I get the following error:

    DBD::mysql::st execute failed: Table 'orthomcl.similarsequences' doesn't exist.

    I am not sure what to do.

    Thanks!
    Tags: orthomcl, orthomclloadblast
  • GenoMax
    Senior Member
    • Feb 2008
    • 7142
    #2
    Did you follow the directions in the user guide to install/configure program/database etc?

    The error above seems to indicate that you either did not create that table or called it something else.

    Comment

    • jflowers002
      Junior Member
      • Jan 2013
      • 6
      #3
      Solved

      Thanks for the reply. I forgot to re-run the InstallSchema script after having to uninstall and then re-install Mysql to deal with issues with that installation.

      Thanks again!

      Comment

      • impessa
        Junior Member
        • Jul 2014
        • 1
        #4
        Hi
        Somebody can said me how to process the output file of OrthoMCL to draw the venn diagrams ?

        Thanks !!

        Comment

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