Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Is there any information about the EGA data??

    hello!!
    I'm now dealing with the " UK10K_NEURO_EDINBURGH" data from European Genome-phenome Archive(EGA)
    https://www.ebi.ac.uk/ega/studies/EGAS00001000117

    I downloaded"EGAD00001000233"and"EGAD00001000317" and the downloaded files are as follows:
    for exapmle,

    file " 7402_4#1.bam " in folder "EGAR00001044664"
    file " 7438_2#7.bam " in folder "EGAR00001045421"
    and
    file " UK10K_EDIN5194723.REL-2012-11-27.vcf.gz.gpg " in folder "EGAZ00001008061"
    file " UK10K_EDIN5194748.REL-2012-11-27.vcf.gz.gpg " in folder "EGAZ00001008075"

    I am confused about:

    1) What the filename mean?
    For example:
    file "7402_4#1.bam" in the folder "EGAR00001044664"
    what the number "1044664"."7402_4 and #1" mean?

    2) Are there connections between"EGARxxxxxx" and "EGAZxxxxxxx"? and what is the connection?

    Are there some naming rules for EGA data? 

    Any information is greatly appreciated. Many thanks in advance

  • #2
    Since the datasets are not open access you should contact the ega help desk ([email protected]) with these questions (unless there is someone on this forum who has information about the EGA project).

    There is also an additional contact email listed on the page that you have provided a link to above.

    Comment

    Latest Articles

    Collapse

    • seqadmin
      Essential Discoveries and Tools in Epitranscriptomics
      by seqadmin




      The field of epigenetics has traditionally concentrated more on DNA and how changes like methylation and phosphorylation of histones impact gene expression and regulation. However, our increased understanding of RNA modifications and their importance in cellular processes has led to a rise in epitranscriptomics research. “Epitranscriptomics brings together the concepts of epigenetics and gene expression,” explained Adrien Leger, PhD, Principal Research Scientist...
      04-22-2024, 07:01 AM
    • seqadmin
      Current Approaches to Protein Sequencing
      by seqadmin


      Proteins are often described as the workhorses of the cell, and identifying their sequences is key to understanding their role in biological processes and disease. Currently, the most common technique used to determine protein sequences is mass spectrometry. While still a valuable tool, mass spectrometry faces several limitations and requires a highly experienced scientist familiar with the equipment to operate it. Additionally, other proteomic methods, like affinity assays, are constrained...
      04-04-2024, 04:25 PM

    ad_right_rmr

    Collapse

    News

    Collapse

    Topics Statistics Last Post
    Started by seqadmin, Today, 11:49 AM
    0 responses
    12 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, Yesterday, 08:47 AM
    0 responses
    16 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 04-11-2024, 12:08 PM
    0 responses
    61 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 04-10-2024, 10:19 PM
    0 responses
    60 views
    0 likes
    Last Post seqadmin  
    Working...
    X