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  • cjo4m4fm
    Junior Member
    • Aug 2013
    • 4

    Is there any information about the EGA data??

    hello!!
    I'm now dealing with the " UK10K_NEURO_EDINBURGH" data from European Genome-phenome Archive(EGA)
    In the UK10K project we propose a series of complementary genetic approaches to find new low frequency/rare variants contributing to disease phenotypes. Thes...


    I downloaded"EGAD00001000233"and"EGAD00001000317" and the downloaded files are as follows:
    for exapmle,

    file " 7402_4#1.bam " in folder "EGAR00001044664"
    file " 7438_2#7.bam " in folder "EGAR00001045421"
    and
    file " UK10K_EDIN5194723.REL-2012-11-27.vcf.gz.gpg " in folder "EGAZ00001008061"
    file " UK10K_EDIN5194748.REL-2012-11-27.vcf.gz.gpg " in folder "EGAZ00001008075"

    I am confused about:

    1) What the filename mean?
    For example:
    file "7402_4#1.bam" in the folder "EGAR00001044664"
    what the number "1044664"."7402_4 and #1" mean?

    2) Are there connections between"EGARxxxxxx" and "EGAZxxxxxxx"? and what is the connection?

    Are there some naming rules for EGA data? 

    Any information is greatly appreciated. Many thanks in advance
  • GenoMax
    Senior Member
    • Feb 2008
    • 7142

    #2
    Since the datasets are not open access you should contact the ega help desk ([email protected]) with these questions (unless there is someone on this forum who has information about the EGA project).

    There is also an additional contact email listed on the page that you have provided a link to above.

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