Hello,
I tried to work with bowtie2 under Linux, but I faced many problems:
1- The command (bowtie2) is not working as it's written in the manual of Bowtie 2 package but normal commands as bowtie and bowtie build are working.
2- the example which is with the package lambda_virus , the basename is not recognized although the index files have this basename, so no alignment is allowed, I tried to build other indexes for other genome and set new basename by bowtie builder, but again the new basename is not recognized by bowtie2
I use the same commands with bowtie1 without any problems so far.
Thanks,
Layal
I tried to work with bowtie2 under Linux, but I faced many problems:
1- The command (bowtie2) is not working as it's written in the manual of Bowtie 2 package but normal commands as bowtie and bowtie build are working.
2- the example which is with the package lambda_virus , the basename is not recognized although the index files have this basename, so no alignment is allowed, I tried to build other indexes for other genome and set new basename by bowtie builder, but again the new basename is not recognized by bowtie2
I use the same commands with bowtie1 without any problems so far.
Thanks,
Layal
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