Unconfigured Ad

Collapse
X
 
  • Filter
  • Time
  • Show
Clear All
new posts
  • atma_weapon
    Member
    • May 2012
    • 11

    Go terms enrichment visualization

    hello, I have a list of Go terms enrichments of a RNAseq differential expression, in the way "GOterm: p-value", I would like to know if there exists a tool for a cool visualization of these results that could be meaningful to biologists...thanks
  • dariober
    Senior Member
    • May 2010
    • 311

    #2
    Originally posted by atma_weapon View Post
    hello, I have a list of Go terms enrichments of a RNAseq differential expression, in the way "GOterm: p-value", I would like to know if there exists a tool for a cool visualization of these results that could be meaningful to biologists...thanks
    Check Revigo http://revigo.irb.hr/. It takes as input a list of "GOterm: p-value" and clusters terms by similarity.
    Dario

    Comment

    • simonandrews
      Simon Andrews
      • May 2009
      • 870

      #3
      Originally posted by dariober View Post
      Check Revigo http://revigo.irb.hr/. It takes as input a list of "GOterm: p-value" and clusters terms by similarity.
      Dario
      Thanks Dario - that looks really interesting, I'll definitely have a play with that.

      Along similar lines we've also used Enrichment Map.

      Comment

      Latest Articles

      Collapse

      • SEQadmin2
        From Collection to Sequencing: Why Sample Preparation and Preservation Define Sequencing Data
        by SEQadmin2


        Data variability is still an issue in sequencing technologies despite the advances in reproducibility and accuracy of these platforms. But the problem does not originate in the sequencing itself, but in the previous steps, before the sample reaches the sequencer.


        The first step is collection, followed by preservation and sample preparation for analysis. Most scientists overlook those steps, but not being careful might just be skewing the experiment’s results.
        ...
        Yesterday, 10:05 AM
      • SEQadmin2
        Single-Cell Sequencing at an Inflection Point: Early Impacts of New Platforms and Emerging Trends
        by SEQadmin2


        With the launch of new single-cell sequencing platforms in 2026, the field stands at an exciting inflection point. This article surveys the most impactful advances in the field and discusses how they’re reshaping research in cancer, immunology, and beyond.


        Introduction

        Single-cell sequencing technologies have undergone remarkable advances over the past decade, transitioning from low-throughput experimental approaches to highly scalable platforms capable of...
        05-22-2026, 06:42 AM
      • SEQadmin2
        Environmental Genomics in the Age of NGS: From Microbes to Conservation Strategies
        by SEQadmin2

        Studying ecosystems means dealing with complex, multi-species communities that are hard to observe at scale. This complexity, however, hides many important questions to be answered, from how biogeochemical cycles work and how climate change can affect species distribution to how conservation strategies can work best.


        Genomics, particularly since the expansion of NGS, has transformed ecosystem ecology. By sequencing environmental DNA, we can now assess biodiversity without direct...
        05-06-2026, 09:04 AM

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by SEQadmin2, Yesterday, 12:03 PM
      0 responses
      19 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, Yesterday, 11:40 AM
      0 responses
      14 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 05-28-2026, 11:40 AM
      0 responses
      29 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 05-26-2026, 10:12 AM
      0 responses
      31 views
      0 reactions
      Last Post SEQadmin2  
      Working...