Hi, I am using genometools and find it quite slow with an 1G fasta file.
When running:
$ gt suffixerator ...
It simply used one cpu and was quite slow. Then I tried:
$ gt -j 4 suffixerator ...
But nothing changed.
So I'm really confused whether gt could use parallel processors to accelerate working, just like RepeatMasker (who has -pa to set number of parallel processors)?
When running:
$ gt suffixerator ...
It simply used one cpu and was quite slow. Then I tried:
$ gt -j 4 suffixerator ...
But nothing changed.
So I'm really confused whether gt could use parallel processors to accelerate working, just like RepeatMasker (who has -pa to set number of parallel processors)?
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