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  • From 16S to genome

    I have a lot of 16S rRNAs ID and it is necessary to obtain whole bacterial genomes if it exists or all bacterial genes (ID or fasta).
    Is it possible to automate?

  • #2
    What IDs do you have? GIs?
    savetherhino.org

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    • #3
      Yes, Gene IDs

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      • #4
        So basically you need to link GIs to NCBI taxon IDs. I think NCBI might even maintain such a file in their FTP. Otherwise, use eutils..
        savetherhino.org

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