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  • Krosh
    Junior Member
    • Feb 2011
    • 8

    #1

    From 16S to genome

    I have a lot of 16S rRNAs ID and it is necessary to obtain whole bacterial genomes if it exists or all bacterial genes (ID or fasta).
    Is it possible to automate?
  • rhinoceros
    Senior Member
    • Apr 2013
    • 372

    #2
    What IDs do you have? GIs?
    savetherhino.org

    Comment

    • Krosh
      Junior Member
      • Feb 2011
      • 8

      #3
      Yes, Gene IDs

      Comment

      • rhinoceros
        Senior Member
        • Apr 2013
        • 372

        #4
        So basically you need to link GIs to NCBI taxon IDs. I think NCBI might even maintain such a file in their FTP. Otherwise, use eutils..
        savetherhino.org

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