Enrichment analysis with DAVID tool - question
Hi All,
I am still new in the field and I have a question please.
I have a dataset of gene expressions and I am running biclustering methods over them. The dataset is colon cancer dataset, When I get the new biclusters I want to do biological validation; enrichment analysis to find how many genes are enriched in each bicluster. I want to use DAVID tool for that.
My question is when I upload my gene set to DAVID tool, I choose "Functional Annotation Clustering" then I have set of clusters for the set of genes that I uploaded with different gene enrichment score. How can I find "Proportion of biclusters significantly enriched" as it has been done in Figure 3 of this paper "A systematic comparison and evaluation of biclustering methods
for gene expression data"
http://bioinformatics.oxfordjournals....full.pdf+html
Any help please? Any hint really appreciated.
Could anyone with experience direct me please.
Thanks!
I am still new in the field and I have a question please.
I have a dataset of gene expressions and I am running biclustering methods over them. The dataset is colon cancer dataset, When I get the new biclusters I want to do biological validation; enrichment analysis to find how many genes are enriched in each bicluster. I want to use DAVID tool for that.
My question is when I upload my gene set to DAVID tool, I choose "Functional Annotation Clustering" then I have set of clusters for the set of genes that I uploaded with different gene enrichment score. How can I find "Proportion of biclusters significantly enriched" as it has been done in Figure 3 of this paper "A systematic comparison and evaluation of biclustering methods
for gene expression data"
http://bioinformatics.oxfordjournals....full.pdf+html
Any help please? Any hint really appreciated.
Could anyone with experience direct me please.
Thanks!
