Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Bacterial genes database download

    Hello All,

    I have one question which may be basic to some of you, anyways I would like to download nucleotide sequences for all genes of Bacteria Kingdom (or its GI list, so I can filter nr/nt database), I tried the following trials, but I am still have some problems:

    1. I tried to search gene database using this inquiry "txid2[Organism:exp]", then send to -> file -> but there are no FASTA or GI list formats.

    2. I downloaded ftp://ftp.ncbi.nih.gov/genomes/Bacteria/all.ffn.tar.gz, but it contains Archeal genes as well, which I would like to filter out. As I wrote in the previous point, I have no GI list for only bacterial genes.

    I would like to do local blast using this database, any suggestions?

    Regards,

    mhadidi

Latest Articles

Collapse

  • seqadmin
    Advanced Tools Transforming the Field of Cytogenomics
    by seqadmin


    At the intersection of cytogenetics and genomics lies the exciting field of cytogenomics. It focuses on studying chromosomes at a molecular scale, involving techniques that analyze either the whole genome or particular DNA sequences to examine variations in structure and behavior at the chromosomal or subchromosomal level. By integrating cytogenetic techniques with genomic analysis, researchers can effectively investigate chromosomal abnormalities related to diseases, particularly...
    09-26-2023, 06:26 AM
  • seqadmin
    How RNA-Seq is Transforming Cancer Studies
    by seqadmin



    Cancer research has been transformed through numerous molecular techniques, with RNA sequencing (RNA-seq) playing a crucial role in understanding the complexity of the disease. Maša Ivin, Ph.D., Scientific Writer at Lexogen, and Yvonne Goepel Ph.D., Product Manager at Lexogen, remarked that “The high-throughput nature of RNA-seq allows for rapid profiling and deep exploration of the transcriptome.” They emphasized its indispensable role in cancer research, aiding in biomarker...
    09-07-2023, 11:15 PM

ad_right_rmr

Collapse

News

Collapse

Topics Statistics Last Post
Started by seqadmin, 09-29-2023, 09:38 AM
0 responses
10 views
0 likes
Last Post seqadmin  
Started by seqadmin, 09-27-2023, 06:57 AM
0 responses
13 views
0 likes
Last Post seqadmin  
Started by seqadmin, 09-26-2023, 07:53 AM
0 responses
30 views
0 likes
Last Post seqadmin  
Started by seqadmin, 09-25-2023, 07:42 AM
0 responses
18 views
0 likes
Last Post seqadmin  
Working...
X