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  • Data txt file

    Hi All,

    I want to ask a very basic question concerning the input file format for Tophat and Cufflinks.

    My data file is txt file and Fastq format. But where I should start for using Tophat, should I just upload the txt file?

    Thanks in advance!

    Wei
    Last edited by Wei-HD; 01-21-2010, 04:20 AM.

  • #2
    Fastq format is ok for tophat. Refer to the tophat manual. Cufflinks uses the output of tophat as input.
    Xi Wang

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    • #3
      Thanks Xi!
      I read the manual, the test_data has .fq suffix, could I use .txt file directly?

      Comment


      • #4
        Usually, yes. If it complains, just rename the file and rerun.
        -Jonathan

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