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  • jordi
    Member
    • Apr 2009
    • 49
    #1

    cutadapt

    Hi all!
    I'm using cutadapt in order to trim some files. Do you know if there is a specific way to pass an adaptor file to cutadapt options?? I mean, is there a way to avoid typing "-b sequence" many times??
    Thanks a lot
    Tags: None
    • Antony03
      Member
      • Apr 2012
      • 53
      #2
      If you have a file with adaptor sequences, you can make a simple bash script with a "while loop" that read every line (adaptor sequence) and pass the sequence to cutadapt.

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