Unconfigured Ad

Collapse
X
Collapse
 
  • Page of 1
  • Time
  • Show
Clear All
new posts
Previous template Next
  • jordi
    Member
    • Apr 2009
    • 49
    #1

    cutadapt

    Hi all!
    I'm using cutadapt in order to trim some files. Do you know if there is a specific way to pass an adaptor file to cutadapt options?? I mean, is there a way to avoid typing "-b sequence" many times??
    Thanks a lot
    Tags: None
    • Antony03
      Member
      • Apr 2012
      • 53
      #2
      If you have a file with adaptor sequences, you can make a simple bash script with a "while loop" that read every line (adaptor sequence) and pass the sequence to cutadapt.

        Comment

        Previous template Next

        Latest Articles

        Collapse
        • SEQadmin2
          Multiomic Liquid Biopsy: What DNA/RNA Panels Reveal That DNA Alone Can’t
          by SEQadmin2



          Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?

          Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating          ...
          10-14-2026, 09:55 AM
        • SEQadmin2
          New Genomics Technologies Take Aim at Long-Standing Limits
          by SEQadmin2


          Researchers using sequencing and genomics tools often have to make trade-offs. They can choose between speed or scale, short reads or long-range information, or targeted panels or a view of the whole transcriptome. New technologies that have been released this year are built to address those tough choices.

          We asked six companies the same four questions to learn about their latest products. The new technologies bring a lot to the table, including rethinking sequencing          ...
          09-28-2026, 10:25 AM
        View All

        ad_right_rmr

        Collapse

        News

        Collapse
        Topics Statistics Last Post
        Mayo Clinic-Led Study Detects DNA Mutations Across Noncancerous Tissues by SEQadmin2
        Started by SEQadmin2, Yesterday, 10:52 AM
        0 responses
        10 views
        0 reactions
        		 Last Post SEQadmin2
        by SEQadmin2
        Yesterday, 10:52 AM  
        Study Finds Chromatin Motion Holds Steady Until Cells Face Stress by SEQadmin2
        Started by SEQadmin2, 10-14-2026, 05:39 AM
        0 responses
        19 views
        0 reactions
        		 Last Post SEQadmin2
        by SEQadmin2
        10-14-2026, 05:39 AM  
        Larger Datasets Reveal Additional Switches That Control Gene Expression by SEQadmin2
        Started by SEQadmin2, 10-13-2026, 09:56 AM
        0 responses
        17 views
        0 reactions
        		 Last Post SEQadmin2
        by SEQadmin2
        10-13-2026, 09:56 AM  
        Computational Tool Captures How Chromatin Folds at Scale by SEQadmin2
        Started by SEQadmin2, 10-09-2026, 11:14 AM
        0 responses
        27 views
        0 reactions
        		 Last Post SEQadmin2
        by SEQadmin2
        10-09-2026, 11:14 AM  
        View All
        Working...