Hi,
I know this subject has been discussed in many posts, and I am sorry if I am double posting.
I have a matrix of gene expression counts and the values are FPKM.
I don't have the sam files.
Can I use cuffdiff with this input?
I can run DESeq2 the way it is described in the tutorial, but it says that the input should be raw counts. What happens if the input is FPKM?
Are there other methods to run DE-test on FPKM values?
Thanks,
Jon
I know this subject has been discussed in many posts, and I am sorry if I am double posting.
I have a matrix of gene expression counts and the values are FPKM.
I don't have the sam files.
Can I use cuffdiff with this input?
I can run DESeq2 the way it is described in the tutorial, but it says that the input should be raw counts. What happens if the input is FPKM?
Are there other methods to run DE-test on FPKM values?
Thanks,
Jon
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