Open access seq data in the NIAID Data Ecosystem

[ehaag]

Helpful resource for finding sequencing data or other biomedical data: https://data.niaid.nih.gov/
You can use the NIAID Data Ecosystem to search across existing repositories (NIAID funded or generalist repositories), filter by various metadata fields, and then access the data from the source.

[seqadmin]

Thank you ehaag. What do you types of data do you use the most from this repository?

[ehaag]

Bulk RNA-seq datasets and RNA-seq analyses of cancer cell lines. But there's even raw sequencing reads, associated phenotypic data, etc. They integrate SRA, GEO, dbGap, and other databases so there's a lot of transcriptomic and functional genomic datasets available