Hi,
Can anybody suggest tool for denovo assembly for RNA Seq data of single end reads..
Thanks
Can anybody suggest tool for denovo assembly for RNA Seq data of single end reads..
Thanks
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MIRA?
This would be easier if you said a little more about the organism, e.g. are you expecting or interested in splice variants, or is it something simpler like a bacteria?Comment
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The organism is mint plant.. Reads of length between 18 to 23...Comment
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These reads are incredibly short. How did you end up with reads this short from an RNA-Seq experiment? With read data this short your chance doing any sort of reasonable de novo assembly is not good.Originally posted by vishwesh View PostComment
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Sorry the actual read size is 50.. and I dint do the rna seq I was just given the file...Comment
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