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  • sindrle
    Senior Member
    • Aug 2013
    • 266
    #1

    First 6 genes missing from HTSeq when read into edgeR

    Hi!

    This is very weird and I discovered it by chance. The first 6 rows from all HTSeq-counts files are missing.

    How come?

    I have only used the commands from the Users Manual.
    Tags: edger, htseq count
    • sindrle
      Senior Member
      • Aug 2013
      • 266
      #2
      I deleted the readDGE "skip" option.. But still the first gene is missing!

        Comment

        • dpryan
          Devon Ryan
          • Jul 2011
          • 3478
          #3
          Remember to use "header=F"...

            Comment

            • sindrle
              Senior Member
              • Aug 2013
              • 266
              #4
              oh man... thx

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