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  • roll
    Member
    • Aug 2009
    • 38

    How to check quality of SNPs

    After running my SNP calling, what are the things i can check to see that my results are good quality? And i didnt do any sislly mistakes?
  • JohnN
    Member
    • Jan 2011
    • 31

    #2
    Originally posted by roll View Post
    After running my SNP calling, what are the things i can check to see that my results are good quality? And i didnt do any sislly mistakes?
    I usually get some PCR sequenced.

    Comment

    • TiborNagy
      Senior Member
      • Mar 2010
      • 329

      #3
      You can also check the alignment in a genome browser. Additional informations (known phenotype, trio data, etc) also can help to find mistakes.

      Comment

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