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  • How to check quality of SNPs

    After running my SNP calling, what are the things i can check to see that my results are good quality? And i didnt do any sislly mistakes?

  • #2
    Originally posted by roll View Post
    After running my SNP calling, what are the things i can check to see that my results are good quality? And i didnt do any sislly mistakes?
    I usually get some PCR sequenced.

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    • #3
      You can also check the alignment in a genome browser. Additional informations (known phenotype, trio data, etc) also can help to find mistakes.

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