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  • frymor
    Senior Member
    • May 2010
    • 151

    #1

    normalizing wig files

    Hi,

    I have a script with multiple steps to analyse RNA-Seq data. One of the steps is running DESeq analysis over the count data, another one is to create wig files from the bam files for visualization.

    For a meaningful graphs I would like to normalize the wig files.

    Does it make sense to visualize them according to the size factors values for each sample from the DESeq analysis?

    Thanks
    Assa

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