Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • CLC results - open source visualization

    Dear all,
    I have a little problem and I was wandering if someone of you could help me.
    I am using CLC genomics workbench to analyze my sequencing data, recently I was doing RNA seq analysis and now I would like somebody remote to be able to visualize results.
    Maybe someone could recommend an open source software that would be good for that purpose?
    Best,
    Magda

  • #2
    IGV (http://www.broadinstitute.org/igv/), IGB (http://bioviz.org/igb/), Tablet (http://bioinf.scri.ac.uk/tablet/) (and others) should help with display of data. You will have to export the alignment files from CLC (with the genome) and make them available.

    Comment


    • #3
      Hi Magda,

      depending on how intensive the exchange of data should be, it could be helpful to share your screen and perhaps provide remote control to your CLC system with tools like Teamviewer (free - and available for Linux, Win, Mac). That way they would see exactly the same as you. Depends of course on security policies etc..
      Last edited by luc; 02-24-2014, 11:11 AM.

      Comment


      • #4
        I don't use CLC but to share genome tracks I make bigwigs, upload them to Galaxy (you can use your own FTP site if you have one), make track URL's for the UCSC Genome Browser then send those URL's to whoever wants to see the data. This way the other person has to do basically zero work, doesn't even have to install anything, and you don't have to send large data files anywhere (except maybe once to upload them to Galaxy).
        Last edited by biznatch; 02-24-2014, 11:05 AM.

        Comment

        Latest Articles

        Collapse

        • seqadmin
          Strategies for Sequencing Challenging Samples
          by seqadmin


          Despite advancements in sequencing platforms and related sample preparation technologies, certain sample types continue to present significant challenges that can compromise sequencing results. Pedro Echave, Senior Manager of the Global Business Segment at Revvity, explained that the success of a sequencing experiment ultimately depends on the amount and integrity of the nucleic acid template (RNA or DNA) obtained from a sample. “The better the quality of the nucleic acid isolated...
          03-22-2024, 06:39 AM
        • seqadmin
          Techniques and Challenges in Conservation Genomics
          by seqadmin



          The field of conservation genomics centers on applying genomics technologies in support of conservation efforts and the preservation of biodiversity. This article features interviews with two researchers who showcase their innovative work and highlight the current state and future of conservation genomics.

          Avian Conservation
          Matthew DeSaix, a recent doctoral graduate from Kristen Ruegg’s lab at The University of Colorado, shared that most of his research...
          03-08-2024, 10:41 AM

        ad_right_rmr

        Collapse

        News

        Collapse

        Topics Statistics Last Post
        Started by seqadmin, Yesterday, 06:37 PM
        0 responses
        12 views
        0 likes
        Last Post seqadmin  
        Started by seqadmin, Yesterday, 06:07 PM
        0 responses
        10 views
        0 likes
        Last Post seqadmin  
        Started by seqadmin, 03-22-2024, 10:03 AM
        0 responses
        52 views
        0 likes
        Last Post seqadmin  
        Started by seqadmin, 03-21-2024, 07:32 AM
        0 responses
        68 views
        0 likes
        Last Post seqadmin  
        Working...
        X