CLC results - open source visualization

[madd.lenka]

Dear all,
I have a little problem and I was wandering if someone of you could help me.
I am using CLC genomics workbench to analyze my sequencing data, recently I was doing RNA seq analysis and now I would like somebody remote to be able to visualize results.
Maybe someone could recommend an open source software that would be good for that purpose?
Best,
Magda

[GenoMax]

IGV (http://www.broadinstitute.org/igv/), IGB (http://bioviz.org/igb/), Tablet (http://bioinf.scri.ac.uk/tablet/) (and others) should help with display of data. You will have to export the alignment files from CLC (with the genome) and make them available.

[luc]

Hi Magda,

depending on how intensive the exchange of data should be, it could be helpful to share your screen and perhaps provide remote control to your CLC system with tools like Teamviewer (free - and available for Linux, Win, Mac). That way they would see exactly the same as you. Depends of course on security policies etc..

[biznatch]

I don't use CLC but to share genome tracks I make bigwigs, upload them to Galaxy (you can use your own FTP site if you have one), make track URL's for the UCSC Genome Browser then send those URL's to whoever wants to see the data. This way the other person has to do basically zero work, doesn't even have to install anything, and you don't have to send large data files anywhere (except maybe once to upload them to Galaxy).