Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • [+] symbols in protein_coords Trinotate

    Dear all, i 've used trinotate with trinity to report an annotation of transcript after assembly.

    when i open file "Trinotate_report.xls", colum "prot_coords", i see 1-585[+] <- so, what is the meaning of [+] after protein coordination?

    Thanks you in advanced

    Last edited by bongbimit; 02-24-2014, 08:59 PM.

  • #2
    A guess: Forward strand? In which case [-] at the end would probably be the reverse stand?

    Comment


    • #3
      Originally posted by maubp View Post
      A guess: Forward strand? In which case [-] at the end would probably be the reverse stand?
      tks u, i forget it, because in protocol also have + and -, its meaning sense and antisense in transcript, i will check in file fastq

      Comment

      Latest Articles

      Collapse

      • seqadmin
        Essential Discoveries and Tools in Epitranscriptomics
        by seqadmin




        The field of epigenetics has traditionally concentrated more on DNA and how changes like methylation and phosphorylation of histones impact gene expression and regulation. However, our increased understanding of RNA modifications and their importance in cellular processes has led to a rise in epitranscriptomics research. “Epitranscriptomics brings together the concepts of epigenetics and gene expression,” explained Adrien Leger, PhD, Principal Research Scientist...
        04-22-2024, 07:01 AM
      • seqadmin
        Current Approaches to Protein Sequencing
        by seqadmin


        Proteins are often described as the workhorses of the cell, and identifying their sequences is key to understanding their role in biological processes and disease. Currently, the most common technique used to determine protein sequences is mass spectrometry. While still a valuable tool, mass spectrometry faces several limitations and requires a highly experienced scientist familiar with the equipment to operate it. Additionally, other proteomic methods, like affinity assays, are constrained...
        04-04-2024, 04:25 PM

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by seqadmin, Today, 08:47 AM
      0 responses
      12 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 04-11-2024, 12:08 PM
      0 responses
      60 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 04-10-2024, 10:19 PM
      0 responses
      59 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 04-10-2024, 09:21 AM
      0 responses
      54 views
      0 likes
      Last Post seqadmin  
      Working...
      X