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  • bongbimit
    Member
    • Dec 2013
    • 29

    #1

    [+] symbols in protein_coords Trinotate

    Dear all, i 've used trinotate with trinity to report an annotation of transcript after assembly.

    when i open file "Trinotate_report.xls", colum "prot_coords", i see 1-585[+] <- so, what is the meaning of [+] after protein coordination?

    Thanks you in advanced

    Last edited by bongbimit; 02-24-2014, 08:59 PM.
  • maubp
    Peter (Biopython etc)
    • Jul 2009
    • 1544

    #2
    A guess: Forward strand? In which case [-] at the end would probably be the reverse stand?

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    • bongbimit
      Member
      • Dec 2013
      • 29

      #3
      Originally posted by maubp View Post
      A guess: Forward strand? In which case [-] at the end would probably be the reverse stand?
      tks u, i forget it, because in protocol also have + and -, its meaning sense and antisense in transcript, i will check in file fastq

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