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for mm10, there are no more rRNA elements in random chromosomes or scaffolds - they have all been placed in regular chromosomes.
mm10_rRNA_rmsk.gtf has 1564 intervals covering 168298 bp
mm10_rRNA_gencode.gtf has 353 intervals covering 39472 bp (vM2 of mouse Gencode)
They overlap on 33.2 kbp, and the only intervals in Gencode that are not present in rmsk at all follow:
Again, one can merge rmsk with these intervals and get the most complete coverage.
mm10_rRNA_rmsk.gtf has 1564 intervals covering 168298 bp
mm10_rRNA_gencode.gtf has 353 intervals covering 39472 bp (vM2 of mouse Gencode)
They overlap on 33.2 kbp, and the only intervals in Gencode that are not present in rmsk at all follow:
Code:
chr2 61798180 61798296 Gm25966 chr6 94826781 94826923 Gm24601 chr14 12427532 12427641 n-R5s45 chr18 73533403 73533550 n-R5-8s1
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