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Protein functional classfication
Hi,
I compared 3 bacterial genomes and find some unique proteins ( ~1000) existing in the 3 organisms. Now I want to classify the proteins to some functional groups, and then I can compared the unique proteins of each genome to find something interesting.
For the number of unique proteins in different genomes is large (about 1000), and there is no common protein among them. I want to classify the proteins to some categories which could decrease the number.
I tried to use the interproscan, and I got the GO number of some proteins ( there were lots of proteins which didn't hits any GO items). How could I handle the GO information? Is there any tools could deal with the interproscan result?
Any ideas are appreciated!
I compared 3 bacterial genomes and find some unique proteins ( ~1000) existing in the 3 organisms. Now I want to classify the proteins to some functional groups, and then I can compared the unique proteins of each genome to find something interesting.
For the number of unique proteins in different genomes is large (about 1000), and there is no common protein among them. I want to classify the proteins to some categories which could decrease the number.
I tried to use the interproscan, and I got the GO number of some proteins ( there were lots of proteins which didn't hits any GO items). How could I handle the GO information? Is there any tools could deal with the interproscan result?
Any ideas are appreciated!
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