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  • blastpgp problem

    I was installing the local version of NetSurfP on my linux server. Everything went well during the installation. However, the problem came when I did the test example, it turned out that something wrong with blastpgp step. The error information is :

    [blastpgp] WARNING: Unable to open nr70.pin

    ----
    How was this caused? and How could I solve this?

    Looking forward to hearing from you! Thank you!

  • #2
    The nr70.pin file can not be found in the database directory.

    Comment


    • #3
      Did you download/install the NR database file as described in step 3: http://www.cbs.dtu.dk/services/doc/netsurfp-1.0.readme?

      Comment


      • #4
        Originally posted by TiborNagy View Post
        The nr70.pin file can not be found in the database directory.
        I don't know the reason, since i have uncompress the nr70_db.tar.gz and move the nr70_db to netsurfp directory, but it still went wrong

        Comment


        • #5
          Originally posted by GenoMax View Post
          Did you download/install the NR database file as described in step 3: http://www.cbs.dtu.dk/services/doc/netsurfp-1.0.readme?
          I did it following the instruction, it still failed...

          Comment


          • #6
            Dear Ybwang,

            Did you find a solution to the problem? I am the author of NetSurfP.

            Cheers,
            Bent
            Bent Petersen
            Assistant Professor, Ph.D.


            Center for Biological Sequence Analysis
            Department of Systems Biology
            Technical University of Denmark
            Kemitorvet, Building 208
            2800 Lyngby

            LinkedIn http://www.linkedin.com/in/bentpetersen
            Twitter: https://twitter.com/bentpetersen
            Blog: http://www.bpetersen.dk/blog/

            Comment


            • #7
              Originally posted by bent View Post
              Dear Ybwang,

              Did you find a solution to the problem? I am the author of NetSurfP.

              Cheers,
              Bent
              Thank you, Bent, I have already fixed the problem, it is the problem of a hidden file in "etc" directory, called ".ncbirc".

              Comment


              • #8
                Good... I am sorry for the inconvenience you had. It was a pure coincidence that I saw this thread actually.

                Thank you for using NetSurfP ! :-)
                Bent Petersen
                Assistant Professor, Ph.D.


                Center for Biological Sequence Analysis
                Department of Systems Biology
                Technical University of Denmark
                Kemitorvet, Building 208
                2800 Lyngby

                LinkedIn http://www.linkedin.com/in/bentpetersen
                Twitter: https://twitter.com/bentpetersen
                Blog: http://www.bpetersen.dk/blog/

                Comment

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