Hi,
I have been trying to make TSS plots. I see that the RPKM values for both the input and enriched ChIPseq samples are close while when I plot them for fold change, the global enrichment in one of the samples around TSS is more than the other. Also, I have two different cell lines, therefore, two different inputs as well.
THank you,
I have been trying to make TSS plots. I see that the RPKM values for both the input and enriched ChIPseq samples are close while when I plot them for fold change, the global enrichment in one of the samples around TSS is more than the other. Also, I have two different cell lines, therefore, two different inputs as well.
THank you,
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